TF_ChIP-seq_ENCSR044RZF
TF_ChIP-seq ENCSR044RZF [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3" and target="NR2E3"]
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| Id: | TF_ChIP-seq/ENCSR044RZF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR044RZF [biosamplesummary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3" and target="NR2E3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN155MTX|/analyses/ENCAN155MTX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF108ULI|/files/ENCFF108ULI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF108ULI|/files/ENCFF108ULI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.91. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF084TDS|/files/ENCFF084TDS/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF084TDS|/files/ENCFF084TDS/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR044RZF | float |
TF_ChIP-seq_ENCSR044RZF |
TF_ChIP-seq ENCSR044RZF [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens NR2E3" and target="NR2E3"]
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[15, 754] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF404ASR.bed.gz | 150.3 KB | a265d3a8efd4d6bd79f475babc933efa |
| ENCFF404ASR.bed.gz.dvc | 100.0 B | ba2de82f4f5d7ecb96eec5646b0bb20f |
| ENCFF404ASR.tabix.bed.gz | 103.27 KB | 7622725273f948101e9b5e09773bb248 |
| ENCFF404ASR.tabix.bed.gz.dvc | 106.0 B | 67b14ecb3f59fe4062e20d89b19e4f75 |
| ENCFF404ASR.tabix.bed.gz.tbi | 48.9 KB | 5d13c6f572c2ea410d01380f964e027a |
| ENCFF404ASR.tabix.bed.gz.tbi.dvc | 109.0 B | 37eac5b209bfdc4b8ac2b379990d1287 |
| genomic_resource.yaml | 4.23 KB | 11df612e2d9bab23b5ebe330de903a09 |
| genomic_resource_original.yaml | 4.07 KB | 7bc0aae9fcd3eefad0c1f27a11953a6f |
| statistics/ |