| Id: | TF_ChIP-seq/ENCSR044FMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR044FMM [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SALL2" and target="SALL2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens SALL2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN925GDD|/analyses/ENCAN925GDD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN925GDD|/analyses/ENCAN925GDD/} has in progress subobject document {97eb97bd-faf8-4835-b6da-999e792a444c|/documents/97eb97bd-faf8-4835-b6da-999e792a444c/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF818PXT|/files/ENCFF818PXT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF818PXT|/files/ENCFF818PXT/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.53. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF892TRD|/files/ENCFF892TRD/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF368TYL|/files/ENCFF368TYL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR044FMM | float |
TF_ChIP-seq_ENCSR044FMM |
TF_ChIP-seq ENCSR044FMM [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens SALL2" and target="SALL2"]
|
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[13.1, 483] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF892TRD.bed.gz | 28.41 KB | a996835119f6351aef9cbffdb3546e3e |
| ENCFF892TRD.bed.gz.dvc | 99.0 B | e7b67b17080cec69589979fba63295d0 |
| ENCFF892TRD.tabix.bed.gz | 19.32 KB | 4bf12d9294f24f9d374e9bed032700fc |
| ENCFF892TRD.tabix.bed.gz.dvc | 105.0 B | cba87dd319dff0db1e0ebb3270e959d9 |
| ENCFF892TRD.tabix.bed.gz.tbi | 18.07 KB | 83cb472dcace5673035be9c56d0712db |
| ENCFF892TRD.tabix.bed.gz.tbi.dvc | 109.0 B | b4ac8a7a6419a43538665896b4680fe0 |
| genomic_resource.yaml | 4.32 KB | ae8450042d3e7b79df04702bf90a0465 |
| genomic_resource_original.yaml | 4.14 KB | c33c1a7130a3fc8e740f379003a6f39e |
| statistics/ |