TF_ChIP-seq_ENCSR043VRG
TF_ChIP-seq ENCSR043VRG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF432" and target="ZNF432"]
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| Id: | TF_ChIP-seq/ENCSR043VRG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR043VRG [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF432" and target="ZNF432"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF432 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN541LML|/analyses/ENCAN541LML/} has in progress subobject document {7fb2d38b-8a75-4d8f-b04a-ac56106c899a|/documents/7fb2d38b-8a75-4d8f-b04a-ac56106c899a/} audit_internal_action: Released analysis {ENCAN541LML|/analyses/ENCAN541LML/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF096KWH|/files/ENCFF096KWH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF096KWH|/files/ENCFF096KWH/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.91. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF270VBD|/files/ENCFF270VBD/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF270VBD|/files/ENCFF270VBD/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.65. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF748KIJ|/files/ENCFF748KIJ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.33. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF137DAF|/files/ENCFF137DAF/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.33. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR043VRG | float |
TF_ChIP-seq_ENCSR043VRG |
TF_ChIP-seq ENCSR043VRG [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF432" and target="ZNF432"]
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[8.92, 385] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF748KIJ.bed.gz | 25.93 KB | 79240a86684d8ba253af9a5a1a2c793c |
| ENCFF748KIJ.bed.gz.dvc | 99.0 B | 4c445f3d8d190f65b1f43df5561413b2 |
| ENCFF748KIJ.tabix.bed.gz | 18.65 KB | 7f36b012823295a47d00e02c4f2bb93a |
| ENCFF748KIJ.tabix.bed.gz.dvc | 105.0 B | a9a3fb7255723d86ae33ff77e0757af2 |
| ENCFF748KIJ.tabix.bed.gz.tbi | 15.67 KB | eec0e5f8e18bd6ec311832d1b8cac253 |
| ENCFF748KIJ.tabix.bed.gz.tbi.dvc | 109.0 B | 5db12f62110beb88c27c0bed936419a0 |
| genomic_resource.yaml | 5.49 KB | 4c19fcacd9ef3652ad5c2593624881fe |
| genomic_resource_original.yaml | 5.33 KB | 7fe72478751489c7410cce94d8d9568c |
| statistics/ |