TF_ChIP-seq_ENCSR042BQZ
TF_ChIP-seq ENCSR042BQZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9" and target="SMAD9"]
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| Id: | TF_ChIP-seq/ENCSR042BQZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR042BQZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9" and target="SMAD9"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN621DZS|/analyses/ENCAN621DZS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN621DZS|/analyses/ENCAN621DZS/} has in progress subobject document {99fae533-c3c9-4ab2-a7ce-59118dad5af9|/documents/99fae533-c3c9-4ab2-a7ce-59118dad5af9/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF067KKS|/files/ENCFF067KKS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF067KKS|/files/ENCFF067KKS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF859JOI|/files/ENCFF859JOI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF859JOI|/files/ENCFF859JOI/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR042BQZ | float |
TF_ChIP-seq_ENCSR042BQZ |
TF_ChIP-seq ENCSR042BQZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMAD9" and target="SMAD9"]
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[9.84, 533] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF339ZPY.bed.gz | 97.21 KB | ced8d9ce90aab1e55cec0adf88da06c8 |
| ENCFF339ZPY.bed.gz.dvc | 99.0 B | c89c3d8848d378072ef4b6c2eeb2b31c |
| ENCFF339ZPY.tabix.bed.gz | 67.74 KB | 9c08babc9a0650315608842af09e653f |
| ENCFF339ZPY.tabix.bed.gz.dvc | 105.0 B | bfa7a674d66c26663c6a9c346249db0e |
| ENCFF339ZPY.tabix.bed.gz.tbi | 41.87 KB | 6752c4c9e51b500e7f13186ece605612 |
| ENCFF339ZPY.tabix.bed.gz.tbi.dvc | 109.0 B | 49fae4fff1a113a8a129d6218131576e |
| genomic_resource.yaml | 4.44 KB | 40f33591e63e5eeeafbc9be9e857bdbf |
| genomic_resource_original.yaml | 4.28 KB | 5371667878cef49a956e2e33905dfa93 |
| statistics/ |