TF_ChIP-seq_ENCSR041YBR
TF_ChIP-seq ENCSR041YBR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12" and target="ZNF12"]
×
| Id: | TF_ChIP-seq/ENCSR041YBR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR041YBR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12" and target="ZNF12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN244ZWT|/analyses/ENCAN244ZWT/} has in progress subobject document {b6196e5b-1b03-4605-a930-14f13b5676ba|/documents/b6196e5b-1b03-4605-a930-14f13b5676ba/} audit_internal_action: Released analysis {ENCAN244ZWT|/analyses/ENCAN244ZWT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF450WCP|/files/ENCFF450WCP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF450WCP|/files/ENCFF450WCP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.53. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF218BFR|/files/ENCFF218BFR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF218BFR|/files/ENCFF218BFR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.46. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR041YBR | float |
TF_ChIP-seq_ENCSR041YBR |
TF_ChIP-seq ENCSR041YBR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF12" and target="ZNF12"]
|
|
[11.1, 867] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF021JCJ.bed.gz | 150.96 KB | 74355febff5b994ddec3a01938d5f58c |
| ENCFF021JCJ.bed.gz.dvc | 100.0 B | 92b6c223a4631e9285ec72418408ac8f |
| ENCFF021JCJ.tabix.bed.gz | 109.34 KB | 272fefbd0a728a9253ced9d7aac4fe32 |
| ENCFF021JCJ.tabix.bed.gz.dvc | 106.0 B | a10d08a0cf410ad2e2a55309e7b093b3 |
| ENCFF021JCJ.tabix.bed.gz.tbi | 59.02 KB | 80d28d8097160e11c89121d87bc12210 |
| ENCFF021JCJ.tabix.bed.gz.tbi.dvc | 109.0 B | 5479f09ab97f72ce0358b7900ec2c1dc |
| genomic_resource.yaml | 4.44 KB | 88712f15d70236815545415919e0c936 |
| genomic_resource_original.yaml | 4.28 KB | 91aae7889a75eb92ca68f3fa72bc8ab2 |
| statistics/ |