TF_ChIP-seq_ENCSR041QAZ
TF_ChIP-seq ENCSR041QAZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219" and target="RNF219"]
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| Id: | TF_ChIP-seq/ENCSR041QAZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR041QAZ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219" and target="RNF219"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RNF219 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN431TRA|/analyses/ENCAN431TRA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF949JVP|/files/ENCFF949JVP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF949JVP|/files/ENCFF949JVP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.10. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF038BLA|/files/ENCFF038BLA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF038BLA|/files/ENCFF038BLA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR041QAZ | float |
TF_ChIP-seq_ENCSR041QAZ |
TF_ChIP-seq ENCSR041QAZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RNF219" and target="RNF219"]
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[14, 527] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF417FFL.bed.gz | 25.5 KB | 5adeb46620d91dc57786dde99b957f81 |
| ENCFF417FFL.bed.gz.dvc | 99.0 B | f0dd99f90ce34f930cf8d23bbf602442 |
| ENCFF417FFL.tabix.bed.gz | 16.35 KB | 9abaff5de3f0649e7c7c214ace6b1943 |
| ENCFF417FFL.tabix.bed.gz.dvc | 105.0 B | 5e6595c058ffb04a0787a9bf80b343e3 |
| ENCFF417FFL.tabix.bed.gz.tbi | 16.1 KB | 69e6d67e6378e3a85ed066c94702c8c1 |
| ENCFF417FFL.tabix.bed.gz.tbi.dvc | 109.0 B | 59e1a6b7888b086a12851cc8e63e553c |
| genomic_resource.yaml | 4.24 KB | 7181577f272e4cef00ec3f1e89997e27 |
| genomic_resource_original.yaml | 4.07 KB | e13f21d9deba5b1b3a0ec716dea88f14 |
| statistics/ |