TF_ChIP-seq_ENCSR041AXL
TF_ChIP-seq ENCSR041AXL [biosample_summary="Homo sapiens K562" and target="RFX1"]
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| Id: | TF_ChIP-seq/ENCSR041AXL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR041AXL [biosamplesummary="Homo sapiens K562" and target="RFX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN319AIE|/analyses/ENCAN319AIE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF862UZN|/files/ENCFF862UZN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19819893 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RFX1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF080MNK|/files/ENCFF080MNK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19908484 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RFX1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF862UZN|/files/ENCFF862UZN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF862UZN|/files/ENCFF862UZN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.95. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF080MNK|/files/ENCFF080MNK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF080MNK|/files/ENCFF080MNK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR041AXL | float |
TF_ChIP-seq_ENCSR041AXL |
TF_ChIP-seq ENCSR041AXL [biosample_summary="Homo sapiens K562" and target="RFX1"]
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[26.6, 2.11e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF237UAN.bed.gz | 290.39 KB | cf2d85601c8811ad39574a73908395c8 |
| ENCFF237UAN.bed.gz.dvc | 100.0 B | c2f233215aea62736d0c094da226726a |
| ENCFF237UAN.tabix.bed.gz | 224.15 KB | 4e370ce15019189eb82fee2b51c8fe50 |
| ENCFF237UAN.tabix.bed.gz.dvc | 106.0 B | ab8265dc6cc4bf3245e1e358c6365acc |
| ENCFF237UAN.tabix.bed.gz.tbi | 136.65 KB | f8614bdedbe7efac273a82b05c2c4c02 |
| ENCFF237UAN.tabix.bed.gz.tbi.dvc | 110.0 B | 0a307139021a2106b3a5075da596316b |
| genomic_resource.yaml | 4.92 KB | 96465ce6bab565940a2dbec65e83f2cf |
| genomic_resource_original.yaml | 4.83 KB | 712859917fbe748a148a925cd9931fa6 |
| statistics/ |