TF_ChIP-seq_ENCSR039IQA
TF_ChIP-seq ENCSR039IQA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BAZ2A" and target="BAZ2A"]
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| Id: | TF_ChIP-seq/ENCSR039IQA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR039IQA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BAZ2A" and target="BAZ2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens BAZ2A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN645GKM|/analyses/ENCAN645GKM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF330VGE|/files/ENCFF330VGE/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF330VGE|/files/ENCFF330VGE/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.51. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF674SKL|/files/ENCFF674SKL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF674SKL|/files/ENCFF674SKL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR039IQA | float |
TF_ChIP-seq_ENCSR039IQA |
TF_ChIP-seq ENCSR039IQA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BAZ2A" and target="BAZ2A"]
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[11.1, 386] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF455PZT.bed.gz | 327.11 KB | dcc0d7727dcc561a70344b22e6a36fce |
| ENCFF455PZT.bed.gz.dvc | 100.0 B | 1dc8fc151c697f8c79dd481a68183335 |
| ENCFF455PZT.tabix.bed.gz | 270.19 KB | 4d9d1b7c3f95d4c3dfe420b7e7fc6a60 |
| ENCFF455PZT.tabix.bed.gz.dvc | 106.0 B | a1a54be63240622199bf954db4146206 |
| ENCFF455PZT.tabix.bed.gz.tbi | 104.82 KB | 65be6781703c3cfb9d6aebbf42bf940a |
| ENCFF455PZT.tabix.bed.gz.tbi.dvc | 110.0 B | 0f7dcd713e3d7088617916e4925d4878 |
| genomic_resource.yaml | 4.23 KB | 39d45fef8669167930137bf571c5e029 |
| genomic_resource_original.yaml | 4.07 KB | 98ad24651c676b284d3797c966f87b55 |
| statistics/ |