TF_ChIP-seq_ENCSR038VWU
TF_ChIP-seq ENCSR038VWU [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR038VWU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR038VWU [biosamplesummary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (40 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN438AXS|/analyses/ENCAN438AXS/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF246GCZ|/files/ENCFF246GCZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF246GCZ|/files/ENCFF246GCZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR038VWU | float |
TF_ChIP-seq_ENCSR038VWU |
TF_ChIP-seq ENCSR038VWU [biosample_summary="Homo sapiens mucosa of descending colon tissue male adult (40 years)" and target="CTCF"]
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[4.81, 169] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF484VPU.bed.gz | 351.4 KB | cb13c81cb800e7d0db26e5790915058c |
| ENCFF484VPU.bed.gz.dvc | 100.0 B | 8a00faf25c5febb56c177ea5d518be16 |
| ENCFF484VPU.tabix.bed.gz | 278.86 KB | 715fe15c5bb342ea79b77d9979537e1f |
| ENCFF484VPU.tabix.bed.gz.dvc | 106.0 B | ee6d6e60f6761818b070451c9c36fdee |
| ENCFF484VPU.tabix.bed.gz.tbi | 157.93 KB | c2a2684ee566adbc8fa6db17dd4bcba5 |
| ENCFF484VPU.tabix.bed.gz.tbi.dvc | 110.0 B | ffb82916692ffeb79e80609c4b91c19f |
| genomic_resource.yaml | 2.78 KB | c26244d9c7be8c8ae6fd05161d9f2664 |
| genomic_resource_original.yaml | 2.64 KB | 935d2332d0f077f6cf05cc8c3869e4ee |
| statistics/ |