type: position_score
table:
  filename: ENCFF620TOF.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR038RXU
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR038RXU [biosample_summary="Homo sapiens MCF-7 stably expressing GABPA" and target="GABPA"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR038RXU [biosample_summary="Homo sapiens MCF-7 stably expressing GABPA" and target="GABPA"]'
  description: '**status**: archived


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: stably expressing C-terminal eGFP-tagged GABPA


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN679POV|/analyses/ENCAN679POV/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_internal\_action**: Archived file {ENCFF620TOF|/files/ENCFF620TOF/} has
    replaced subobject file {7e5ea6db-b812-4d5b-a70b-a11f8b4711a4|/files/7e5ea6db-b812-4d5b-a70b-a11f8b4711a4/}


    **audit\_warning**: Processed alignments file {ENCFF191KBY|/files/ENCFF191KBY/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18074945 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    GABPA-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR038RXU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: stably expressing C-terminal eGFP-tagged GABPA
    biosample_summary: Homo sapiens MCF-7 stably expressing GABPA
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001203/
    perturbed: false
    doi: 10.17989/ENCSR038RXU
    date_created: '2016-03-11T20:50:23.422233+00:00'
    date_released: '2016-06-13'
    submitter_comment: ''
    target: GABPA
