| Id: | TF_ChIP-seq/ENCSR037LQB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR037LQB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN25" and target="ZSCAN25"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN25 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN712HJT|/analyses/ENCAN712HJT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF725GIP|/files/ENCFF725GIP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF725GIP|/files/ENCFF725GIP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.22. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR037LQB | float |
TF_ChIP-seq_ENCSR037LQB |
TF_ChIP-seq ENCSR037LQB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZSCAN25" and target="ZSCAN25"]
|
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[10.9, 794] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF460DRP.bed.gz | 362.91 KB | 7898961c1c888e3d4ec372e5e5586dd5 |
| ENCFF460DRP.bed.gz.dvc | 100.0 B | 4fb75f61e76e27d1e8b1967564782faa |
| ENCFF460DRP.tabix.bed.gz | 279.01 KB | b6707236d2fdb2e82c392cc32e945e19 |
| ENCFF460DRP.tabix.bed.gz.dvc | 106.0 B | c6f52d8e3bb1b3739d3713fbdf2df04b |
| ENCFF460DRP.tabix.bed.gz.tbi | 108.25 KB | 3dbf7d82fb6d91cb7a71c734e939d1e5 |
| ENCFF460DRP.tabix.bed.gz.tbi.dvc | 110.0 B | 90ba3acb438fd181c1340a09c502b39b |
| genomic_resource.yaml | 2.98 KB | e3527e986874a3748d905245085cb7cc |
| genomic_resource_original.yaml | 2.81 KB | 00d71fcccf788cabdfa1e5cdbf7964b2 |
| statistics/ |