TF_ChIP-seq_ENCSR036QIR
TF_ChIP-seq ENCSR036QIR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F3" and target="E2F3"]
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| Id: | TF_ChIP-seq/ENCSR036QIR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR036QIR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F3" and target="E2F3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens E2F3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN607QMQ|/analyses/ENCAN607QMQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN607QMQ|/analyses/ENCAN607QMQ/} has in progress subobject document {6520fe61-faef-4be6-96a4-bf21978a4999|/documents/6520fe61-faef-4be6-96a4-bf21978a4999/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF949LTD|/files/ENCFF949LTD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF949LTD|/files/ENCFF949LTD/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.60. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF269AZH|/files/ENCFF269AZH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF269AZH|/files/ENCFF269AZH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.13. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR036QIR | float |
TF_ChIP-seq_ENCSR036QIR |
TF_ChIP-seq ENCSR036QIR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F3" and target="E2F3"]
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[15.5, 2.02e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF710UAZ.bed.gz | 156.83 KB | 7c5edafafd9e3235282b2b096d560175 |
| ENCFF710UAZ.bed.gz.dvc | 100.0 B | 8eb02ec85eb24621af7882350fd97676 |
| ENCFF710UAZ.tabix.bed.gz | 107.46 KB | d5ce5b66a4a80035b4fc29ca175b6f5a |
| ENCFF710UAZ.tabix.bed.gz.dvc | 106.0 B | be8f22dee223d2ea4d8248e059391ba1 |
| ENCFF710UAZ.tabix.bed.gz.tbi | 64.58 KB | bb75c7b9405c9938f9608adf9fe63446 |
| ENCFF710UAZ.tabix.bed.gz.tbi.dvc | 109.0 B | 64adf1125652e931da7f707257e64f40 |
| genomic_resource.yaml | 4.43 KB | 0f37420a93f5f79c55ca63cf81affffa |
| genomic_resource_original.yaml | 4.27 KB | 1bc9b1e7ab84da30bbac55712861bd62 |
| statistics/ |