TF_ChIP-seq_ENCSR034IND
TF_ChIP-seq ENCSR034IND [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232" and target="ZNF232"]
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| Id: | TF_ChIP-seq/ENCSR034IND |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR034IND [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232" and target="ZNF232"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN761OSX|/analyses/ENCAN761OSX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF561UMM|/files/ENCFF561UMM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF561UMM|/files/ENCFF561UMM/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF393UBL|/files/ENCFF393UBL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF393UBL|/files/ENCFF393UBL/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.74. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR034IND | float |
TF_ChIP-seq_ENCSR034IND |
TF_ChIP-seq ENCSR034IND [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF232" and target="ZNF232"]
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[9.18, 464] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF641XDM.bed.gz | 168.52 KB | 9c238d8659716ffa3d1b16ad0e352bb5 |
| ENCFF641XDM.bed.gz.dvc | 100.0 B | dd6ebcb9fc6b5ed243101b7dd22f6266 |
| ENCFF641XDM.tabix.bed.gz | 122.01 KB | 99d3a3617fe9e22b863bf35baa01ebf8 |
| ENCFF641XDM.tabix.bed.gz.dvc | 106.0 B | 58fb1368452960d22105d314fd28e5c2 |
| ENCFF641XDM.tabix.bed.gz.tbi | 70.64 KB | 9e96eb664fea727e49ffa45935cb9271 |
| ENCFF641XDM.tabix.bed.gz.tbi.dvc | 109.0 B | d553fb167ac77a740cc4d965f657722d |
| genomic_resource.yaml | 4.24 KB | 2c2731eb48d9b412990b2bbad3b9cb5d |
| genomic_resource_original.yaml | 4.07 KB | 77d1ace030633b10d832cc51f3e5a3b9 |
| statistics/ |