TF_ChIP-seq_ENCSR034GHQ
TF_ChIP-seq ENCSR034GHQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20B" and target="HMG20B"]
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| Id: | TF_ChIP-seq/ENCSR034GHQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR034GHQ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20B" and target="HMG20B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HMG20B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN316SRB|/analyses/ENCAN316SRB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF200END|/files/ENCFF200END/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF200END|/files/ENCFF200END/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.62. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF119HTI|/files/ENCFF119HTI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF119HTI|/files/ENCFF119HTI/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR034GHQ | float |
TF_ChIP-seq_ENCSR034GHQ |
TF_ChIP-seq ENCSR034GHQ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens HMG20B" and target="HMG20B"]
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[16.3, 422] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF099OSI.bed.gz | 22.81 KB | 93e6ef8811870cce814a547b84a63efd |
| ENCFF099OSI.bed.gz.dvc | 99.0 B | 22efe7bc08e5ab51da6054356a372786 |
| ENCFF099OSI.tabix.bed.gz | 15.67 KB | 91b749978a86b3f15bfb1b1a30c8c2e6 |
| ENCFF099OSI.tabix.bed.gz.dvc | 105.0 B | baa70e0a7fd1c9e7596ff6074068d1c3 |
| ENCFF099OSI.tabix.bed.gz.tbi | 14.3 KB | d05d3204697d694de718b0e7b8cbf453 |
| ENCFF099OSI.tabix.bed.gz.tbi.dvc | 109.0 B | bc6712e68b36fbf64eed84f7a68568e7 |
| genomic_resource.yaml | 4.24 KB | a5ad5acc203b5808b45403374692a79a |
| genomic_resource_original.yaml | 4.07 KB | 3aceebc10c48b5471b06f8a4d54ef1c9 |
| statistics/ |