TF_ChIP-seq_ENCSR033NHF
TF_ChIP-seq ENCSR033NHF [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR033NHF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR033NHF [biosamplesummary="Homo sapiens upper lobe of left lung tissue male adult (54 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN797YON|/analyses/ENCAN797YON/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF719ANC|/files/ENCFF719ANC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF719ANC|/files/ENCFF719ANC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR033NHF | float |
TF_ChIP-seq_ENCSR033NHF |
TF_ChIP-seq ENCSR033NHF [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (54 years)" and target="POLR2A"]
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[9.09, 4.17e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF023MUY.bed.gz | 617.26 KB | 29dfbc1ed8be037449cb58245e7837a2 |
| ENCFF023MUY.bed.gz.dvc | 100.0 B | 69b8886637fe89ea6e9853308cb42746 |
| ENCFF023MUY.tabix.bed.gz | 412.96 KB | bc31e6d74f807c9420de25682446f446 |
| ENCFF023MUY.tabix.bed.gz.dvc | 106.0 B | f45abafd31716a9e90941f208956d4b0 |
| ENCFF023MUY.tabix.bed.gz.tbi | 155.21 KB | adc070eea7b4bb9e5b948b6732c72b50 |
| ENCFF023MUY.tabix.bed.gz.tbi.dvc | 110.0 B | 4094e05a3cbacd217af1f020880d8c6f |
| genomic_resource.yaml | 2.78 KB | 998b2df8d41deb728aa9bba85da269b0 |
| genomic_resource_original.yaml | 2.64 KB | be59040b48ba9b595c33c6389ecf5933 |
| statistics/ |