TF_ChIP-seq_ENCSR032LZZ
TF_ChIP-seq ENCSR032LZZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362" and target="ZNF362"]
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| Id: | TF_ChIP-seq/ENCSR032LZZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR032LZZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362" and target="ZNF362"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN597IDK|/analyses/ENCAN597IDK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN597IDK|/analyses/ENCAN597IDK/} has in progress subobject document {8c42b273-091b-4407-ad48-e3744d0aba1d|/documents/8c42b273-091b-4407-ad48-e3744d0aba1d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF197LBQ|/files/ENCFF197LBQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF197LBQ|/files/ENCFF197LBQ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.35. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF732AML|/files/ENCFF732AML/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF732AML|/files/ENCFF732AML/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.35. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF361PBY|/files/ENCFF361PBY/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.77 and a self consistency ratio of 3.72. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF256AZN|/files/ENCFF256AZN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.77 and a self consistency ratio of 3.72. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR032LZZ | float |
TF_ChIP-seq_ENCSR032LZZ |
TF_ChIP-seq ENCSR032LZZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF362" and target="ZNF362"]
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[9.67, 766] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF361PBY.bed.gz | 452.7 KB | e1e62add2fef7aae4b303db62162cf03 |
| ENCFF361PBY.bed.gz.dvc | 100.0 B | 50726e6f5b9f62f426a5711102145c88 |
| ENCFF361PBY.tabix.bed.gz | 335.36 KB | 014e5e205385d5d5411b059b00140df7 |
| ENCFF361PBY.tabix.bed.gz.dvc | 106.0 B | 53432a6b75eec36c53915d0e5a04e5d5 |
| ENCFF361PBY.tabix.bed.gz.tbi | 138.99 KB | dded24a30d430ceb80a15a346379b5ef |
| ENCFF361PBY.tabix.bed.gz.tbi.dvc | 110.0 B | bc280ad2e3ea668497dee47f51a828de |
| genomic_resource.yaml | 5.49 KB | 7a34d453844f3384348fbceca89de6bf |
| genomic_resource_original.yaml | 5.33 KB | 2be4ce2faf2f9a19c476feeb2d17ff4d |
| statistics/ |