TF_ChIP-seq_ENCSR032DGZ
TF_ChIP-seq ENCSR032DGZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281" and target="ZNF281"]
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| Id: | TF_ChIP-seq/ENCSR032DGZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR032DGZ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281" and target="ZNF281"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN894TWB|/analyses/ENCAN894TWB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF481RDR|/files/ENCFF481RDR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF481RDR|/files/ENCFF481RDR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF026BQD|/files/ENCFF026BQD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF026BQD|/files/ENCFF026BQD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.09. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR032DGZ | float |
TF_ChIP-seq_ENCSR032DGZ |
TF_ChIP-seq ENCSR032DGZ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF281" and target="ZNF281"]
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[8.14, 413] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF716OVN.bed.gz | 147.79 KB | dd81290009f147feb6a9db9e441d5e1f |
| ENCFF716OVN.bed.gz.dvc | 100.0 B | dc20a9bc1002cbe1ecbc10e119b6bb8a |
| ENCFF716OVN.tabix.bed.gz | 110.72 KB | ce198dca343c954cccb8081994f7d32d |
| ENCFF716OVN.tabix.bed.gz.dvc | 106.0 B | 8ebeb0a5f666ce37a79d024bf9c6503f |
| ENCFF716OVN.tabix.bed.gz.tbi | 68.77 KB | a8a64dd496c6cc4e7baeb8a167872a88 |
| ENCFF716OVN.tabix.bed.gz.tbi.dvc | 109.0 B | 64a80d54e35eeb5c4d6474d750720b8f |
| genomic_resource.yaml | 4.24 KB | 38d2d298871be27039092b3d543d090d |
| genomic_resource_original.yaml | 4.07 KB | 8bc007094b4e9e7f172e15359a9bc6eb |
| statistics/ |