TF_ChIP-seq_ENCSR031URL
TF_ChIP-seq ENCSR031URL [biosample_summary="Homo sapiens HepG2" and target="XRCC5"]
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| Id: | TF_ChIP-seq/ENCSR031URL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR031URL [biosamplesummary="Homo sapiens HepG2" and target="XRCC5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF790ZAQ|/files/ENCFF790ZAQ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Released analysis {ENCAN181LLH|/analyses/ENCAN181LLH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF117KAP|/files/ENCFF117KAP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF117KAP|/files/ENCFF117KAP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.72. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF705LQZ|/files/ENCFF705LQZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF705LQZ|/files/ENCFF705LQZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.32. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR031URL | float |
TF_ChIP-seq_ENCSR031URL |
TF_ChIP-seq ENCSR031URL [biosample_summary="Homo sapiens HepG2" and target="XRCC5"]
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[8.93, 417] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF790ZAQ.bed.gz | 553.6 KB | 48045af22a4b7f95666293bc446bb5b9 |
| ENCFF790ZAQ.bed.gz.dvc | 100.0 B | 00ca0055d02c68c9505973e66aeca72e |
| ENCFF790ZAQ.tabix.bed.gz | 418.71 KB | 97ceaa423030069a1f86942653d6d68c |
| ENCFF790ZAQ.tabix.bed.gz.dvc | 106.0 B | 2af7b94fa8e88e006257a99200bd55c9 |
| ENCFF790ZAQ.tabix.bed.gz.tbi | 174.53 KB | ffffea160f359e9e10ecc44816289c78 |
| ENCFF790ZAQ.tabix.bed.gz.tbi.dvc | 110.0 B | e7e3dc3b2d399deabf75f5df47cd5ab3 |
| genomic_resource.yaml | 4.13 KB | 8b22db98f4594e1bb9f3977c59865ca6 |
| genomic_resource_original.yaml | 4.03 KB | 7b0dd85a5904394e1e7c86f41c1e1513 |
| statistics/ |