TF_ChIP-seq_ENCSR031TFS
TF_ChIP-seq ENCSR031TFS [biosample_summary="Homo sapiens K562" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR031TFS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR031TFS [biosamplesummary="Homo sapiens K562" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF881ONC|/files/ENCFF881ONC/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN029ALU|/analyses/ENCAN029ALU/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF559BJS|/files/ENCFF559BJS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18835842 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF559BJS|/files/ENCFF559BJS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF559BJS|/files/ENCFF559BJS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.03. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF725WJS|/files/ENCFF725WJS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF725WJS|/files/ENCFF725WJS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.96. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR031TFS | float |
TF_ChIP-seq_ENCSR031TFS |
TF_ChIP-seq ENCSR031TFS [biosample_summary="Homo sapiens K562" and target="POLR2A"]
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[10.4, 8.36e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF881ONC.bed.gz | 448.26 KB | f8a5691141a23717efbeb8a04ca5463d |
| ENCFF881ONC.bed.gz.dvc | 100.0 B | 6bddb731f3932d8fe6d37f1c0b7875ed |
| ENCFF881ONC.tabix.bed.gz | 327.7 KB | cf322ed635df19083f107afc4bf88a4f |
| ENCFF881ONC.tabix.bed.gz.dvc | 106.0 B | bb73cbf69c05f768ef31b408a198b09f |
| ENCFF881ONC.tabix.bed.gz.tbi | 121.84 KB | 23be262d4cbd6833ff60f5ace96ab8c6 |
| ENCFF881ONC.tabix.bed.gz.tbi.dvc | 110.0 B | dea1d2c2b661832ad922918109d0270f |
| genomic_resource.yaml | 4.63 KB | be6c6cd1294bb6297150f3074d10d647 |
| genomic_resource_original.yaml | 4.53 KB | f2d18f3e444168a8c21f00c1a115397a |
| statistics/ |