TF_ChIP-seq_ENCSR031KWR
TF_ChIP-seq ENCSR031KWR [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR031KWR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR031KWR [biosamplesummary="Homo sapiens adrenal gland tissue female adult (53 years)" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN350QYG|/analyses/ENCAN350QYG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN350QYG|/analyses/ENCAN350QYG/} has in progress subobject document {f9129507-4d2c-483e-9a30-caf6ff5462a8|/documents/f9129507-4d2c-483e-9a30-caf6ff5462a8/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF431JOS|/files/ENCFF431JOS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF431JOS|/files/ENCFF431JOS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.31. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR031KWR | float |
TF_ChIP-seq_ENCSR031KWR |
TF_ChIP-seq ENCSR031KWR [biosample_summary="Homo sapiens adrenal gland tissue female adult (53 years)" and target="POLR2A"]
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[10.1, 1.29e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF779EDF.bed.gz | 240.7 KB | 45d9d93c7734709598cfd58f01d2a4b6 |
| ENCFF779EDF.bed.gz.dvc | 100.0 B | 8f15679da11aae019a4c4f9ec45f35d7 |
| ENCFF779EDF.tabix.bed.gz | 172.25 KB | e6df6a9813ec750d71c594eb7d38f547 |
| ENCFF779EDF.tabix.bed.gz.dvc | 106.0 B | 86902360f38e6e2209158b32b42e8a0d |
| ENCFF779EDF.tabix.bed.gz.tbi | 91.02 KB | 65428f494769355695b140ae36a4b443 |
| ENCFF779EDF.tabix.bed.gz.tbi.dvc | 109.0 B | fb237a0e5faba8a38ebae9c70fcc32cd |
| genomic_resource.yaml | 2.96 KB | 7d089ec064fd29730b99ad3e38fdb9bb |
| genomic_resource_original.yaml | 2.83 KB | f9faea9fdcaa2c4d8ad394c51df70707 |
| statistics/ |