TF_ChIP-seq_ENCSR029TLS
TF_ChIP-seq ENCSR029TLS [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6" and target="ETV6"]
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| Id: | TF_ChIP-seq/ENCSR029TLS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR029TLS [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6" and target="ETV6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ETV6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN466NJV|/analyses/ENCAN466NJV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF530SWY|/files/ENCFF530SWY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF530SWY|/files/ENCFF530SWY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.38. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF437ZIU|/files/ENCFF437ZIU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF437ZIU|/files/ENCFF437ZIU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR029TLS | float |
TF_ChIP-seq_ENCSR029TLS |
TF_ChIP-seq ENCSR029TLS [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ETV6" and target="ETV6"]
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[13.3, 566] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF008QFJ.bed.gz | 353.52 KB | 27ca391478c8b10c9c062eeb4a7edb4e |
| ENCFF008QFJ.bed.gz.dvc | 100.0 B | dbf2a369df209b7c5003b597a6ec8088 |
| ENCFF008QFJ.tabix.bed.gz | 256.64 KB | 3939f33989fb4983e0f044c06f9866fa |
| ENCFF008QFJ.tabix.bed.gz.dvc | 106.0 B | 9f7f054004c08bab34a5c45bccbfaf10 |
| ENCFF008QFJ.tabix.bed.gz.tbi | 127.8 KB | 0eeeb5e49ab2acf79dc3fd6811479f34 |
| ENCFF008QFJ.tabix.bed.gz.tbi.dvc | 110.0 B | e86716c0f07a0da02b0bdc380bd92f12 |
| genomic_resource.yaml | 4.22 KB | 8bad3c58f61b29d567a75cff857ab798 |
| genomic_resource_original.yaml | 4.06 KB | 7ef8e2ab3b083f2f3d0214fae2568e46 |
| statistics/ |