TF_ChIP-seq_ENCSR029OPK
TF_ChIP-seq ENCSR029OPK [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA" and target="ESRRA"]
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| Id: | TF_ChIP-seq/ENCSR029OPK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR029OPK [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA" and target="ESRRA"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN399SKX|/analyses/ENCAN399SKX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF826TAK|/files/ENCFF826TAK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF826TAK|/files/ENCFF826TAK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.48. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF081CNK|/files/ENCFF081CNK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF081CNK|/files/ENCFF081CNK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.03. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF258HYD|/files/ENCFF258HYD/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline have a rescue ratio of 1.22 and a self consistency ratio of 3.17. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR029OPK | float |
TF_ChIP-seq_ENCSR029OPK |
TF_ChIP-seq ENCSR029OPK [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ESRRA" and target="ESRRA"]
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[8.69, 408] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF258HYD.bed.gz | 129.3 KB | 926693a8330d6ac433a8058f755b181c |
| ENCFF258HYD.bed.gz.dvc | 100.0 B | cc7e253ff1b76284e32fea38d10b114c |
| ENCFF258HYD.tabix.bed.gz | 92.94 KB | c865f015c7b18fd6a1fc542e884becba |
| ENCFF258HYD.tabix.bed.gz.dvc | 105.0 B | 36d07932c4f9d71ae284fefe3b150134 |
| ENCFF258HYD.tabix.bed.gz.tbi | 57.21 KB | 751ccd376f3e565ecf1c1ca0520cdbbd |
| ENCFF258HYD.tabix.bed.gz.tbi.dvc | 109.0 B | ca86a82e293a6a6ab3800683b7f9f1d0 |
| genomic_resource.yaml | 4.75 KB | fef554b97797f6b34aae743a365c14e6 |
| genomic_resource_original.yaml | 4.59 KB | d9d3af204e8961277f8c7e597b23d934 |
| statistics/ |