TF_ChIP-seq_ENCSR028YEV
TF_ChIP-seq ENCSR028YEV [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR028YEV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR028YEV [biosamplesummary="Homo sapiens spleen tissue male adult (54 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN324PZF|/analyses/ENCAN324PZF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF569UCD|/files/ENCFF569UCD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF569UCD|/files/ENCFF569UCD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.34. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR028YEV | float |
TF_ChIP-seq_ENCSR028YEV |
TF_ChIP-seq ENCSR028YEV [biosample_summary="Homo sapiens spleen tissue male adult (54 years)" and target="CTCF"]
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[16.6, 4.85e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF741BED.bed.gz | 570.85 KB | c6396699b537b24c35b1291ff4277b2e |
| ENCFF741BED.bed.gz.dvc | 100.0 B | fa61abd41414ebe3323dccb82b058452 |
| ENCFF741BED.tabix.bed.gz | 408.86 KB | eeceac8a8955738e451dd38ffa25b17d |
| ENCFF741BED.tabix.bed.gz.dvc | 106.0 B | e78d8dcd97fe845b800d528a32c71484 |
| ENCFF741BED.tabix.bed.gz.tbi | 215.93 KB | 9e99ad254aaf3c604744bb2f80587118 |
| ENCFF741BED.tabix.bed.gz.tbi.dvc | 110.0 B | 1b082b8cd885d1bb843a9d42dc9b38e7 |
| genomic_resource.yaml | 2.72 KB | 3e2cb6e5ef9748821cf64c762555fef7 |
| genomic_resource_original.yaml | 2.6 KB | 7cd5e7621a8f9c8e29c0bea4102e17e6 |
| statistics/ |