TF_ChIP-seq_ENCSR028NUR
TF_ChIP-seq ENCSR028NUR [biosample_summary="Homo sapiens MCF-7" and target="ZNF592"]
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| Id: | TF_ChIP-seq/ENCSR028NUR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR028NUR [biosamplesummary="Homo sapiens MCF-7" and target="ZNF592"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF720PZA|/files/ENCFF720PZA/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Released file {ENCFF720PZA|/files/ENCFF720PZA/} has replaced subobject file {dddadf5b-6ae4-4d2f-9983-f58440941ece|/files/dddadf5b-6ae4-4d2f-9983-f58440941ece/} audit_internal_action: Archived analysis {ENCAN571SRA|/analyses/ENCAN571SRA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF014OEB|/files/ENCFF014OEB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17243659 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF592-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF521YRB|/files/ENCFF521YRB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 17947051 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF592-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF317VVJ|/files/ENCFF317VVJ/}, {ENCFF720PZA|/files/ENCFF720PZA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.80 and a self consistency ratio of 1.67. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF062CWH|/files/ENCFF062CWH/}, {ENCFF007ENR|/files/ENCFF007ENR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.80 and a self consistency ratio of 1.67. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR028NUR | float |
TF_ChIP-seq_ENCSR028NUR |
TF_ChIP-seq ENCSR028NUR [biosample_summary="Homo sapiens MCF-7" and target="ZNF592"]
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[9.81, 1.59e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF720PZA.bed.gz | 22.2 KB | 0fa59eff3e782145682af6db245c929d |
| ENCFF720PZA.bed.gz.dvc | 99.0 B | 3a815357efe85503046f9a0a12171bba |
| ENCFF720PZA.tabix.bed.gz | 14.74 KB | 468a91be58b0448b202ced0880e1bc49 |
| ENCFF720PZA.tabix.bed.gz.dvc | 105.0 B | 206159887b071a64d9375ef902749f7d |
| ENCFF720PZA.tabix.bed.gz.tbi | 13.5 KB | 7426b1f4af6b1a88d7efc71d312ef243 |
| ENCFF720PZA.tabix.bed.gz.tbi.dvc | 109.0 B | 563cf473019c8b71fe461b1b864259a5 |
| genomic_resource.yaml | 3.86 KB | 4e1145d0108836cb3c2fabe19b950160 |
| genomic_resource_original.yaml | 3.77 KB | 23f7f37191ad970305e8964ca5fc835c |
| statistics/ |