TF_ChIP-seq_ENCSR026KKZ
TF_ChIP-seq ENCSR026KKZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17" and target="ZBTB17"]
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| Id: | TF_ChIP-seq/ENCSR026KKZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR026KKZ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17" and target="ZBTB17"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN694ZGE|/analyses/ENCAN694ZGE/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN694ZGE|/analyses/ENCAN694ZGE/} has in progress subobject document {e26ad299-2466-42d7-bfb2-affa3df019ab|/documents/e26ad299-2466-42d7-bfb2-affa3df019ab/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF670GFN|/files/ENCFF670GFN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF670GFN|/files/ENCFF670GFN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.09. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF631KYO|/files/ENCFF631KYO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF631KYO|/files/ENCFF631KYO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.29. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR026KKZ | float |
TF_ChIP-seq_ENCSR026KKZ |
TF_ChIP-seq ENCSR026KKZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB17" and target="ZBTB17"]
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[15.3, 4.38e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292HSS.bed.gz | 276.39 KB | 8bed469c7f2fbb0d0865b541324bb14e |
| ENCFF292HSS.bed.gz.dvc | 100.0 B | d969bb868559198fb0b7f7971d6fb166 |
| ENCFF292HSS.tabix.bed.gz | 200.35 KB | 37c8f7b8851a733c52b461fc0418d509 |
| ENCFF292HSS.tabix.bed.gz.dvc | 106.0 B | a5993b698439ca2d43b98f5f01aef7b6 |
| ENCFF292HSS.tabix.bed.gz.tbi | 95.07 KB | 62741d7088b51c372971f2d3e835cb2d |
| ENCFF292HSS.tabix.bed.gz.tbi.dvc | 109.0 B | 7b5b5cad327701a58a0687fe30437a2b |
| genomic_resource.yaml | 4.45 KB | 9718a64905b9f1a7a91641e9eee1b52e |
| genomic_resource_original.yaml | 4.28 KB | 40dd9a4b0266463678e9ef684b6f73cc |
| statistics/ |