TF_ChIP-seq_ENCSR026GSW
TF_ChIP-seq ENCSR026GSW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1" and target="EGR1"]
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| Id: | TF_ChIP-seq/ENCSR026GSW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR026GSW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1" and target="EGR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens EGR1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN722LUP|/analyses/ENCAN722LUP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN722LUP|/analyses/ENCAN722LUP/} has in progress subobject document {81061bc7-6ed6-4229-953c-e657ec015aeb|/documents/81061bc7-6ed6-4229-953c-e657ec015aeb/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF595MHF|/files/ENCFF595MHF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF595MHF|/files/ENCFF595MHF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF084FDL|/files/ENCFF084FDL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF084FDL|/files/ENCFF084FDL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR026GSW | float |
TF_ChIP-seq_ENCSR026GSW |
TF_ChIP-seq ENCSR026GSW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens EGR1" and target="EGR1"]
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[9.88, 1e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF603PUS.bed.gz | 738.24 KB | 1261e092cb12501c67b32b170aebbb49 |
| ENCFF603PUS.bed.gz.dvc | 100.0 B | ac9998e9e6d5a248ea65884ff86de5d0 |
| ENCFF603PUS.tabix.bed.gz | 545.87 KB | 74a8dd266516a7b69fa2cb6714c620ef |
| ENCFF603PUS.tabix.bed.gz.dvc | 106.0 B | d6c44d8511ba38a731212ffd49653c3c |
| ENCFF603PUS.tabix.bed.gz.tbi | 180.16 KB | 5ac6c81d6136726a90a18c142d9ee28c |
| ENCFF603PUS.tabix.bed.gz.tbi.dvc | 110.0 B | 90a4c906aceb47cd3b65980c66eab553 |
| genomic_resource.yaml | 4.43 KB | 0df57ecec67d29c1b69eade07f4f125d |
| genomic_resource_original.yaml | 4.27 KB | 9d145e76f84ef8385dbdeb1e59c0d9a2 |
| statistics/ |