TF_ChIP-seq_ENCSR025EXJ
TF_ChIP-seq ENCSR025EXJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF5" and target="IRF5"]
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| Id: | TF_ChIP-seq/ENCSR025EXJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR025EXJ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF5" and target="IRF5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens IRF5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN471WHU|/analyses/ENCAN471WHU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN471WHU|/analyses/ENCAN471WHU/} has in progress subobject document {5ecbdef8-e5c9-446a-a64a-b2e5d4b872f4|/documents/5ecbdef8-e5c9-446a-a64a-b2e5d4b872f4/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF184MWK|/files/ENCFF184MWK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF184MWK|/files/ENCFF184MWK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.16. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF316SWS|/files/ENCFF316SWS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF316SWS|/files/ENCFF316SWS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR025EXJ | float |
TF_ChIP-seq_ENCSR025EXJ |
TF_ChIP-seq ENCSR025EXJ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens IRF5" and target="IRF5"]
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[12.1, 521] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF827VMW.bed.gz | 200.58 KB | cee71003f73125484a6162b6062be23a |
| ENCFF827VMW.bed.gz.dvc | 100.0 B | 15651b8bf090636a9e655a7fc1636598 |
| ENCFF827VMW.tabix.bed.gz | 157.09 KB | 0cf3871fe0775392493bf2e5bd346dd1 |
| ENCFF827VMW.tabix.bed.gz.dvc | 106.0 B | dd62e21042ef3cd31b1c2705df351541 |
| ENCFF827VMW.tabix.bed.gz.tbi | 71.77 KB | eb4cdb914b79acb13fd8e61858ad0840 |
| ENCFF827VMW.tabix.bed.gz.tbi.dvc | 109.0 B | 06f8e6268b56944a4677d67359c00248 |
| genomic_resource.yaml | 4.43 KB | 79a053f64f9023fdfd84a19c92dd2d55 |
| genomic_resource_original.yaml | 4.27 KB | 1ceb9dcb98762b040f02dd888852ecb1 |
| statistics/ |