TF_ChIP-seq_ENCSR024ZIS
TF_ChIP-seq ENCSR024ZIS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF260" and target="ZNF260"]
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| Id: | TF_ChIP-seq/ENCSR024ZIS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR024ZIS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF260" and target="ZNF260"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF260 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN889VRX|/analyses/ENCAN889VRX/} has replaced subobject file {a7157aca-1c16-44c2-9018-a4e6bd0931df|/files/a7157aca-1c16-44c2-9018-a4e6bd0931df/} audit_internal_action: Released analysis {ENCAN889VRX|/analyses/ENCAN889VRX/} has in progress subobject document {75089d73-cf7d-43df-b7c5-68beebd7bb5e|/documents/75089d73-cf7d-43df-b7c5-68beebd7bb5e/} audit_internal_action: Released analysis {ENCAN889VRX|/analyses/ENCAN889VRX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF897AVP|/files/ENCFF897AVP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17821955 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF260-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF554IUV|/files/ENCFF554IUV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF554IUV|/files/ENCFF554IUV/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.93. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF612MQA|/files/ENCFF612MQA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 3.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF859IQR|/files/ENCFF859IQR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 3.57. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR024ZIS | float |
TF_ChIP-seq_ENCSR024ZIS |
TF_ChIP-seq ENCSR024ZIS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF260" and target="ZNF260"]
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[7.01, 176] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF612MQA.bed.gz | 29.09 KB | 02b4022156b54f8f9a5532bb171e13f7 |
| ENCFF612MQA.bed.gz.dvc | 99.0 B | 5b1a3084d544d6e0f9c38a0df57e9f5b |
| ENCFF612MQA.tabix.bed.gz | 20.83 KB | 0aedccf4f08d59a242388391323aa728 |
| ENCFF612MQA.tabix.bed.gz.dvc | 105.0 B | 5738d3178e6e0e0f461f45a7ba533932 |
| ENCFF612MQA.tabix.bed.gz.tbi | 16.51 KB | 8056ec167f35ecc0f966d4c41c5298fc |
| ENCFF612MQA.tabix.bed.gz.tbi.dvc | 109.0 B | 4f3175ba9b4952a2d898bd2367abeae0 |
| genomic_resource.yaml | 4.91 KB | af2958b089c07413fbc50191fcbf4f9c |
| genomic_resource_original.yaml | 4.75 KB | 029008d13db84c826049e3deb0a0ac97 |
| statistics/ |