TF_ChIP-seq_ENCSR024CNP
TF_ChIP-seq ENCSR024CNP [biosample_summary="Homo sapiens K562" and target="EGR1"]
×
| Id: | TF_ChIP-seq/ENCSR024CNP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR024CNP [biosamplesummary="Homo sapiens K562" and target="EGR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN521ALN|/analyses/ENCAN521ALN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF317UJS|/files/ENCFF317UJS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19891934 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EGR1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF317UJS|/files/ENCFF317UJS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF317UJS|/files/ENCFF317UJS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.64. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR024CNP | float |
TF_ChIP-seq_ENCSR024CNP |
TF_ChIP-seq ENCSR024CNP [biosample_summary="Homo sapiens K562" and target="EGR1"]
|
|
[11.3, 1.36e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF558JBX.bed.gz | 591.52 KB | 8149a5a796a465fc5a678edf965522ce |
| ENCFF558JBX.bed.gz.dvc | 100.0 B | 3a8c82cdbe0ced1aaa0ef95cd58d847c |
| ENCFF558JBX.tabix.bed.gz | 421.33 KB | a54f84e5e98d9ecabbfcee0f9184ec8f |
| ENCFF558JBX.tabix.bed.gz.dvc | 106.0 B | 3cf6e4bcd471aadc41729fa3c7c6b9af |
| ENCFF558JBX.tabix.bed.gz.tbi | 188.5 KB | b01f42ad7240adb6cfc767219d97aced |
| ENCFF558JBX.tabix.bed.gz.tbi.dvc | 110.0 B | f4ec664b429b3ae909ffac0d83e9dc34 |
| genomic_resource.yaml | 3.13 KB | 3888ec8765990d54f6cb304e32996969 |
| genomic_resource_original.yaml | 3.04 KB | 1a28e5626b2ce5d1c21a64c9f5e17038 |
| statistics/ |