| Id: | TF_ChIP-seq/ENCSR023KKB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR023KKB [biosamplesummary="Homo sapiens SK-N-SH genetically modified\ \ (insertion) using CRISPR targeting H. sapiens ESRRG treated with 6 \u03BCM all-trans-retinoic\ \ acid for 48 hours" and target="ESRRG"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: treated with 6 μM all-trans-retinoic acid for 48 hours genetically modified (insertion) using CRISPR targeting H. sapiens ESRRG output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN296QCQ|/analyses/ENCAN296QCQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN296QCQ|/analyses/ENCAN296QCQ/} has in progress subobject document {4c36dd3f-10c2-47c5-ac7a-1af9e1a9bd5d|/documents/4c36dd3f-10c2-47c5-ac7a-1af9e1a9bd5d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF960DTU|/files/ENCFF960DTU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF960DTU|/files/ENCFF960DTU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF313COQ|/files/ENCFF313COQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF313COQ|/files/ENCFF313COQ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.57. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR023KKB | float |
TF_ChIP-seq_ENCSR023KKB |
TF_ChIP-seq ENCSR023KKB [biosample_summary="Homo sapiens SK-N-SH genetically modified\ \ (insertion) using CRISPR targeting H. sapiens ESRRG treated with 6 \u03BCM all-trans-retinoic\ \ acid for 48 hours" and target="ESRRG"]
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[14.1, 948] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF213KSD.bed.gz | 69.98 KB | 94e35e52d6638d892953fc44d96db764 |
| ENCFF213KSD.bed.gz.dvc | 99.0 B | 9a8e2caf76333ae692ee4441a42ec3ae |
| ENCFF213KSD.tabix.bed.gz | 45.01 KB | 160fdbe7652720f7178a9fcf66ddc996 |
| ENCFF213KSD.tabix.bed.gz.dvc | 105.0 B | 0bd41887da7e70f5dbec753b962c496c |
| ENCFF213KSD.tabix.bed.gz.tbi | 36.2 KB | dee605d16cd28c3589f112d8b581c87e |
| ENCFF213KSD.tabix.bed.gz.tbi.dvc | 109.0 B | d9868049b1d12dfd9c2dc13b44066614 |
| genomic_resource.yaml | 4.9 KB | 8ab080c792fc57b7f4a01470a55fb383 |
| genomic_resource_original.yaml | 4.67 KB | 9481a2fcead1d2d8809f052af672bd8e |
| statistics/ |