TF_ChIP-seq_ENCSR023IPQ
TF_ChIP-seq ENCSR023IPQ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2" and target="PRRX2"]
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| Id: | TF_ChIP-seq/ENCSR023IPQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR023IPQ [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2" and target="PRRX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN603QTM|/analyses/ENCAN603QTM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF462KFV|/files/ENCFF462KFV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF462KFV|/files/ENCFF462KFV/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.68. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF955BOS|/files/ENCFF955BOS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF955BOS|/files/ENCFF955BOS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR023IPQ | float |
TF_ChIP-seq_ENCSR023IPQ |
TF_ChIP-seq ENCSR023IPQ [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens PRRX2" and target="PRRX2"]
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[13.8, 1.38e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF728JNA.bed.gz | 64.21 KB | 14d63920dc0f6a21bebac6b41425ed8a |
| ENCFF728JNA.bed.gz.dvc | 99.0 B | f8928da712459c15fe806f6ce4cb69b9 |
| ENCFF728JNA.tabix.bed.gz | 41.56 KB | c3f9ff4b6ea238ba5b6c60ddac6f1026 |
| ENCFF728JNA.tabix.bed.gz.dvc | 105.0 B | 60e7a91484731d2deb4b992ad18c7c2b |
| ENCFF728JNA.tabix.bed.gz.tbi | 29.61 KB | 206b0a68e0394c12e67416b8acf4c697 |
| ENCFF728JNA.tabix.bed.gz.tbi.dvc | 109.0 B | 71240152f67862b503e1f7e3d04c03ac |
| genomic_resource.yaml | 4.23 KB | 36f19f9fa941d7f3ea29397abafc9fc1 |
| genomic_resource_original.yaml | 4.07 KB | 3f4b0a017e9310cefda45f11c32ed9da |
| statistics/ |