| Id: | TF_ChIP-seq/ENCSR020UPN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR020UPN [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF184" and target="ZNF184"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF184 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN431XQO|/analyses/ENCAN431XQO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF045FIY|/files/ENCFF045FIY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF706FUH|/files/ENCFF706FUH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF706FUH|/files/ENCFF706FUH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.59. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR020UPN | float |
TF_ChIP-seq_ENCSR020UPN |
TF_ChIP-seq ENCSR020UPN [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF184" and target="ZNF184"]
|
 |
[17, 2.04e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF045FIY.bed.gz | 250.36 KB | 40ba022ad25babf260793dd7f5e92029 |
| ENCFF045FIY.bed.gz.dvc | 100.0 B | 042d6ce8e8dff02f993de2f3ae3c6d8b |
| ENCFF045FIY.tabix.bed.gz | 168.08 KB | 17be2e77e85842c954cdd5150829f963 |
| ENCFF045FIY.tabix.bed.gz.dvc | 106.0 B | 97e1027ee727fedbd9f6e4fe32de6ded |
| ENCFF045FIY.tabix.bed.gz.tbi | 103.19 KB | fcf35f0cb3233d4d53b542ca7c25f540 |
| ENCFF045FIY.tabix.bed.gz.tbi.dvc | 110.0 B | 93dcb35d22ebca9fe9b1b3c33f60a7fb |
| genomic_resource.yaml | 3.25 KB | 91cd520b9ecf6ca46c9c2f6a84af53b2 |
| genomic_resource_original.yaml | 3.07 KB | c3be89572a94e207bc5f8e66af54faff |
| statistics/ |