TF_ChIP-seq_ENCSR020CLV
TF_ChIP-seq ENCSR020CLV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891" and target="ZNF891"]
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| Id: | TF_ChIP-seq/ENCSR020CLV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR020CLV [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891" and target="ZNF891"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN685MIR|/analyses/ENCAN685MIR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN685MIR|/analyses/ENCAN685MIR/} has in progress subobject document {d74b0d83-da24-4851-b9c6-9cb9b6723f86|/documents/d74b0d83-da24-4851-b9c6-9cb9b6723f86/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF373BKR|/files/ENCFF373BKR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF373BKR|/files/ENCFF373BKR/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.14. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF446NBX|/files/ENCFF446NBX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF446NBX|/files/ENCFF446NBX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.41. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR020CLV | float |
TF_ChIP-seq_ENCSR020CLV |
TF_ChIP-seq ENCSR020CLV [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF891" and target="ZNF891"]
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[16.1, 565] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF903IZG.bed.gz | 324.35 KB | 3a543da9dbc79e3a1c82441a6dad1b8e |
| ENCFF903IZG.bed.gz.dvc | 100.0 B | 5a4bfcd2fae2e9327a31b1420bb83c16 |
| ENCFF903IZG.tabix.bed.gz | 250.63 KB | 15ffbfb80ddd176a73d9507b019742b8 |
| ENCFF903IZG.tabix.bed.gz.dvc | 106.0 B | e3d9cd2a55ae2a9c3987cb5ce19ac26a |
| ENCFF903IZG.tabix.bed.gz.tbi | 102.4 KB | 33babe564f84967be03ff32989c537cf |
| ENCFF903IZG.tabix.bed.gz.tbi.dvc | 110.0 B | 424ae7eb8ddb7931ca3a624087a33c45 |
| genomic_resource.yaml | 4.45 KB | 1697e34e7d243c8394f87c0aa928e40f |
| genomic_resource_original.yaml | 4.29 KB | e73ce19829fcf84489ed789b8059efa5 |
| statistics/ |