TF_ChIP-seq_ENCSR019NPF
TF_ChIP-seq ENCSR019NPF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP5" and target="SP5"]
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| Id: | TF_ChIP-seq/ENCSR019NPF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR019NPF [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP5" and target="SP5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SP5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN106KHQ|/analyses/ENCAN106KHQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN106KHQ|/analyses/ENCAN106KHQ/} has in progress subobject document {77311b98-08bb-4fbb-8fed-316edd6ed6e3|/documents/77311b98-08bb-4fbb-8fed-316edd6ed6e3/} audit_warning: Processed alignments file {ENCFF557FLC|/files/ENCFF557FLC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19980748 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SP5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF347UBA|/files/ENCFF347UBA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.10 and a self consistency ratio of 2.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR019NPF | float |
TF_ChIP-seq_ENCSR019NPF |
TF_ChIP-seq ENCSR019NPF [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SP5" and target="SP5"]
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[5.33, 496] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF347UBA.bed.gz | 399.07 KB | e1b95dc7deb2fadfb5cd5a50db034e18 |
| ENCFF347UBA.bed.gz.dvc | 100.0 B | 2f8c71ec6d019e19d52337a63626b1aa |
| ENCFF347UBA.tabix.bed.gz | 309.69 KB | f0a3d35c46248b84839390d55e8ea766 |
| ENCFF347UBA.tabix.bed.gz.dvc | 106.0 B | a08a5152cedbe91fd144a6d8562fa02a |
| ENCFF347UBA.tabix.bed.gz.tbi | 140.99 KB | 83e2f2ce802b086b349272737dd3951a |
| ENCFF347UBA.tabix.bed.gz.tbi.dvc | 110.0 B | c341f31ac7ecc474c728db4283a95ebe |
| genomic_resource.yaml | 2.9 KB | 9e1f13806ea6cda821ed6787b65ba9b0 |
| genomic_resource_original.yaml | 2.74 KB | 5f4f066cd12d25b615cfc935112df48f |
| statistics/ |