TF_ChIP-seq_ENCSR017XHZ
TF_ChIP-seq ENCSR017XHZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707" and target="ZNF707"]
×
| Id: | TF_ChIP-seq/ENCSR017XHZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR017XHZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707" and target="ZNF707"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN713JUR|/analyses/ENCAN713JUR/} has in progress subobject document {3a916a56-c667-4a69-a42b-ba30c55a2a60|/documents/3a916a56-c667-4a69-a42b-ba30c55a2a60/} audit_internal_action: Released analysis {ENCAN713JUR|/analyses/ENCAN713JUR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF655TKE|/files/ENCFF655TKE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF655TKE|/files/ENCFF655TKE/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.92. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF784BAJ|/files/ENCFF784BAJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF784BAJ|/files/ENCFF784BAJ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.66. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR017XHZ | float |
TF_ChIP-seq_ENCSR017XHZ |
TF_ChIP-seq ENCSR017XHZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF707" and target="ZNF707"]
|
|
[10.2, 411] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF497RWP.bed.gz | 117.54 KB | 87fb611467c37a88318d5619de482842 |
| ENCFF497RWP.bed.gz.dvc | 100.0 B | 35ce7bc295a266f9cd21d3c156ec92e2 |
| ENCFF497RWP.tabix.bed.gz | 90.69 KB | 6f9b78a01f42948dc22183cf4a3dc475 |
| ENCFF497RWP.tabix.bed.gz.dvc | 105.0 B | 04d61f43df6892d95f1be8b8002cc228 |
| ENCFF497RWP.tabix.bed.gz.tbi | 47.47 KB | f0311e352cf1d5c86cffa0b32e57cd6d |
| ENCFF497RWP.tabix.bed.gz.tbi.dvc | 109.0 B | 3a9e35ae134e7494c4b379f5b2093224 |
| genomic_resource.yaml | 4.45 KB | 7d993f651341985ac208280a58b7029e |
| genomic_resource_original.yaml | 4.29 KB | 83e7ee3488b927f743529f626f90717b |
| statistics/ |