TF_ChIP-seq_ENCSR017EJY
TF_ChIP-seq ENCSR017EJY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens DLX4" and target="DLX4"]
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| Id: | TF_ChIP-seq/ENCSR017EJY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR017EJY [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens DLX4" and target="DLX4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens DLX4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN959OMP|/analyses/ENCAN959OMP/} has in progress subobject document {5205cf0c-ba39-43a9-b096-7577a6e35a21|/documents/5205cf0c-ba39-43a9-b096-7577a6e35a21/} audit_internal_action: Released analysis {ENCAN959OMP|/analyses/ENCAN959OMP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF278MFG|/files/ENCFF278MFG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF278MFG|/files/ENCFF278MFG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.94. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR017EJY | float |
TF_ChIP-seq_ENCSR017EJY |
TF_ChIP-seq ENCSR017EJY [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens DLX4" and target="DLX4"]
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[15.3, 780] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF832DBU.bed.gz | 10.51 KB | 8d549573a8b98c815fb5791bb1f2f78a |
| ENCFF832DBU.bed.gz.dvc | 99.0 B | 84640b761fe820336a601b635ce15e55 |
| ENCFF832DBU.tabix.bed.gz | 6.5 KB | 513c948ca1c3c524b54217526cf178cf |
| ENCFF832DBU.tabix.bed.gz.dvc | 104.0 B | 12cc2c5a5f3ee07aadf26bccf56ef8fa |
| ENCFF832DBU.tabix.bed.gz.tbi | 8.66 KB | c63c67a18378027c83c2967dbb82add3 |
| ENCFF832DBU.tabix.bed.gz.tbi.dvc | 108.0 B | f62c9eefecf3d4fa1be24a6c127c55f2 |
| genomic_resource.yaml | 3.17 KB | 88d30e6d077adc7357d9330203ecd2c2 |
| genomic_resource_original.yaml | 3.0 KB | 0bc3270c5b43cf75a9c2856f9f93add4 |
| statistics/ |