TF_ChIP-seq_ENCSR017CEO
TF_ChIP-seq ENCSR017CEO [biosample_summary="Homo sapiens MCF-7" and target="CUX1"]
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| Id: | TF_ChIP-seq/ENCSR017CEO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR017CEO [biosamplesummary="Homo sapiens MCF-7" and target="CUX1"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN263VUO|/analyses/ENCAN263VUO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF216GDM|/files/ENCFF216GDM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF216GDM|/files/ENCFF216GDM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR017CEO | float |
TF_ChIP-seq_ENCSR017CEO |
TF_ChIP-seq ENCSR017CEO [biosample_summary="Homo sapiens MCF-7" and target="CUX1"]
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[13.5, 1.22e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF572YVL.bed.gz | 303.27 KB | f198a4bd13b4f6eea757257bd24eb6e7 |
| ENCFF572YVL.bed.gz.dvc | 100.0 B | c5311dbfa0e2280ff9a5285e635ae1e2 |
| ENCFF572YVL.tabix.bed.gz | 212.49 KB | 5dc337611020e9b90b6b81d60c73204d |
| ENCFF572YVL.tabix.bed.gz.dvc | 106.0 B | b6b80da7065e16b333757e20f42aa637 |
| ENCFF572YVL.tabix.bed.gz.tbi | 122.28 KB | 8f104fe98b36bff0e13fb6331f26b227 |
| ENCFF572YVL.tabix.bed.gz.tbi.dvc | 110.0 B | fb3e828a99f2fb36949f9ea406f2d30b |
| genomic_resource.yaml | 2.64 KB | 97e13b2f864d47e2607fdd48aa57bf43 |
| genomic_resource_original.yaml | 2.55 KB | ae8ca5973ca654566b4e62af633948a7 |
| statistics/ |