TF_ChIP-seq_ENCSR016UEH
TF_ChIP-seq ENCSR016UEH [biosample_summary="Homo sapiens GM12878" and target="TARDBP"]
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| Id: | TF_ChIP-seq/ENCSR016UEH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR016UEH [biosamplesummary="Homo sapiens GM12878" and target="TARDBP"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN085TIS|/analyses/ENCAN085TIS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF871LZM|/files/ENCFF871LZM/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF963FTZ|/files/ENCFF963FTZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19562564 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TARDBP-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF334VIL|/files/ENCFF334VIL/}, {ENCFF781QRT|/files/ENCFF781QRT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.23 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF887EVV|/files/ENCFF887EVV/}, {ENCFF871LZM|/files/ENCFF871LZM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.23 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR016UEH | float |
TF_ChIP-seq_ENCSR016UEH |
TF_ChIP-seq ENCSR016UEH [biosample_summary="Homo sapiens GM12878" and target="TARDBP"]
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[5.6, 323] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF871LZM.bed.gz | 119.55 KB | 18c5363d23846665ae270bf20fd17ce2 |
| ENCFF871LZM.bed.gz.dvc | 100.0 B | 4cd19fefdccb03e5fc8fc5c27fd55025 |
| ENCFF871LZM.tabix.bed.gz | 89.2 KB | d8591fd11dc206f37e5fe0dfcc5c6f5e |
| ENCFF871LZM.tabix.bed.gz.dvc | 105.0 B | a580a48974b8f958e8de682c3c24f05b |
| ENCFF871LZM.tabix.bed.gz.tbi | 53.17 KB | 47e25dad4aac0fdba5c9ae6ad3af8dbe |
| ENCFF871LZM.tabix.bed.gz.tbi.dvc | 109.0 B | 7166cf6f629416d44f83bd81982170d6 |
| genomic_resource.yaml | 3.17 KB | be3034a3673149eb941e1e1a2529e5f4 |
| genomic_resource_original.yaml | 3.07 KB | 4fe8a9e915eeb628c7aa2c884c97e509 |
| statistics/ |