TF_ChIP-seq_ENCSR016OHL
TF_ChIP-seq ENCSR016OHL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317" and target="ZNF317"]
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| Id: | TF_ChIP-seq/ENCSR016OHL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR016OHL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317" and target="ZNF317"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN350UDX|/analyses/ENCAN350UDX/} has in progress subobject document {cca1256d-2921-4d7a-ae4e-355bb79acb59|/documents/cca1256d-2921-4d7a-ae4e-355bb79acb59/} audit_internal_action: Released analysis {ENCAN350UDX|/analyses/ENCAN350UDX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF295DRP|/files/ENCFF295DRP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF295DRP|/files/ENCFF295DRP/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.23. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF436EHA|/files/ENCFF436EHA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF436EHA|/files/ENCFF436EHA/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.77. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR016OHL | float |
TF_ChIP-seq_ENCSR016OHL |
TF_ChIP-seq ENCSR016OHL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF317" and target="ZNF317"]
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[11.3, 970] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF865WCB.bed.gz | 417.45 KB | bebac73def9df91c2ccb497e7851d9ea |
| ENCFF865WCB.bed.gz.dvc | 100.0 B | 4eace636a0f333ad8b8fbd245f202b79 |
| ENCFF865WCB.tabix.bed.gz | 322.23 KB | d3cf2c77395a473e55fcd07d8bcf489c |
| ENCFF865WCB.tabix.bed.gz.dvc | 106.0 B | c1ff9266be7e146f2730b97f8e68db4b |
| ENCFF865WCB.tabix.bed.gz.tbi | 130.78 KB | 23d9c974f47f111b9fad7e24104da6a5 |
| ENCFF865WCB.tabix.bed.gz.tbi.dvc | 110.0 B | e175f7aa2afb496042cd2015241e734f |
| genomic_resource.yaml | 4.45 KB | ec6dee5ce4065018b508b897664b38d4 |
| genomic_resource_original.yaml | 4.29 KB | 6880044f0032f3304a561ca87faa2428 |
| statistics/ |