TF_ChIP-seq_ENCSR016BMM
TF_ChIP-seq ENCSR016BMM [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="TAF1"]
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| Id: | TF_ChIP-seq/ENCSR016BMM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR016BMM [biosamplesummary="Homo sapiens liver tissue female child (4 years)" and target="TAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (4 years) output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN171TUA|/analyses/ENCAN171TUA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF699WGX|/files/ENCFF699WGX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF699WGX|/files/ENCFF699WGX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR016BMM | float |
TF_ChIP-seq_ENCSR016BMM |
TF_ChIP-seq ENCSR016BMM [biosample_summary="Homo sapiens liver tissue female child (4 years)" and target="TAF1"]
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[7.74, 564] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF204SKW.bed.gz | 275.93 KB | e4c147be4caa22774ab496f842fbc3f9 |
| ENCFF204SKW.bed.gz.dvc | 100.0 B | 6fbe63739cf2dc5e7a5650c9517e084d |
| ENCFF204SKW.tabix.bed.gz | 225.86 KB | 168a04ebc74ea833125535d3cab05883 |
| ENCFF204SKW.tabix.bed.gz.dvc | 106.0 B | 20fa5cf5b55d2637c14a61a3b3234b5d |
| ENCFF204SKW.tabix.bed.gz.tbi | 92.62 KB | 3a752214e2ca6e42b7a743e8d77332e4 |
| ENCFF204SKW.tabix.bed.gz.tbi.dvc | 109.0 B | 28277efddbe0b049407416c40e2bf49e |
| genomic_resource.yaml | 3.08 KB | f169e2c0b1260284b6273295240a3624 |
| genomic_resource_original.yaml | 2.96 KB | 8fcb8f33e098dc27a486aa15b7ebe48e |
| statistics/ |