TF_ChIP-seq_ENCSR015TKV
TF_ChIP-seq ENCSR015TKV [biosample_summary="Homo sapiens HepG2" and target="BCLAF1"]
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| Id: | TF_ChIP-seq/ENCSR015TKV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR015TKV [biosamplesummary="Homo sapiens HepG2" and target="BCLAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN060MCU|/analyses/ENCAN060MCU/} has in progress subobject document {63303394-b181-4499-ad02-5cbc5effe0a4|/documents/63303394-b181-4499-ad02-5cbc5effe0a4/} audit_internal_action: Released analysis {ENCAN060MCU|/analyses/ENCAN060MCU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF280BQX|/files/ENCFF280BQX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF280BQX|/files/ENCFF280BQX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR015TKV | float |
TF_ChIP-seq_ENCSR015TKV |
TF_ChIP-seq ENCSR015TKV [biosample_summary="Homo sapiens HepG2" and target="BCLAF1"]
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[21, 124] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF022GRJ.bed.gz | 1.05 KB | 872ca1fba9e1628bb4aec4f3bcd715f6 |
| ENCFF022GRJ.bed.gz.dvc | 98.0 B | df9c049c6085ea90c920688856a99105 |
| ENCFF022GRJ.tabix.bed.gz | 680.0 B | e1912b569e6cb79d4e05be66998d8aca |
| ENCFF022GRJ.tabix.bed.gz.dvc | 103.0 B | b4593a0f430c8782a6ad7b311e763d47 |
| ENCFF022GRJ.tabix.bed.gz.tbi | 1.13 KB | d3802e755ba8816994450f5474de956f |
| ENCFF022GRJ.tabix.bed.gz.tbi.dvc | 108.0 B | e8823b1279a7f562b2b50e4acbbe694f |
| genomic_resource.yaml | 2.88 KB | bcb5cf56c2641edcad138e6fd439dcf3 |
| genomic_resource_original.yaml | 2.78 KB | e522328b7482838d729300b53036dbaa |
| statistics/ |