TF_ChIP-seq_ENCSR014YCR
TF_ChIP-seq ENCSR014YCR [biosample_summary="Homo sapiens GM12878" and target="ATF7"]
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| Id: | TF_ChIP-seq/ENCSR014YCR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR014YCR [biosamplesummary="Homo sapiens GM12878" and target="ATF7"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN676SQN|/analyses/ENCAN676SQN/} has in progress subobject document {3a76fd62-f8c5-4a8f-a690-ad030798171d|/documents/3a76fd62-f8c5-4a8f-a690-ad030798171d/} audit_internal_action: Released analysis {ENCAN676SQN|/analyses/ENCAN676SQN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF301KIW|/files/ENCFF301KIW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17284526 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF579YKO|/files/ENCFF579YKO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17335982 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF7-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF301KIW|/files/ENCFF301KIW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF301KIW|/files/ENCFF301KIW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR014YCR | float |
TF_ChIP-seq_ENCSR014YCR |
TF_ChIP-seq ENCSR014YCR [biosample_summary="Homo sapiens GM12878" and target="ATF7"]
|
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[9.68, 7.57e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF277FJJ.bed.gz | 698.32 KB | 55ca13a2e14b90838faac57fd3d3abb0 |
| ENCFF277FJJ.bed.gz.dvc | 100.0 B | 645fa7f4151689d46f1b3fb57c8b9291 |
| ENCFF277FJJ.tabix.bed.gz | 501.11 KB | d4141a095d0e46ee6590e79caf68ef39 |
| ENCFF277FJJ.tabix.bed.gz.dvc | 106.0 B | fe91266a429336375e1bb35f71e08cc7 |
| ENCFF277FJJ.tabix.bed.gz.tbi | 208.51 KB | a440cebc468ea8356776943bdd9fb526 |
| ENCFF277FJJ.tabix.bed.gz.tbi.dvc | 110.0 B | fa163cdbf720344598d935d709da355a |
| genomic_resource.yaml | 4.23 KB | 2703e293c48ff0f05eb41828a615f047 |
| genomic_resource_original.yaml | 4.13 KB | 6e79d423bbfa219f17e7ea6eb163cc4d |
| statistics/ |