TF_ChIP-seq_ENCSR014HQD
TF_ChIP-seq ENCSR014HQD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF382" and target="ZNF382"]
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| Id: | TF_ChIP-seq/ENCSR014HQD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR014HQD [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF382" and target="ZNF382"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF382 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN731HMH|/analyses/ENCAN731HMH/} has in progress subobject document {a6a8293d-3f29-4801-b1ef-3adf1fcc6dfb|/documents/a6a8293d-3f29-4801-b1ef-3adf1fcc6dfb/} audit_internal_action: Released analysis {ENCAN731HMH|/analyses/ENCAN731HMH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF836TQV|/files/ENCFF836TQV/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF836TQV|/files/ENCFF836TQV/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.59. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF716XED|/files/ENCFF716XED/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF716XED|/files/ENCFF716XED/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.95. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF524CCS|/files/ENCFF524CCS/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.65 and a self consistency ratio of 5.65. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF564AXY|/files/ENCFF564AXY/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.65 and a self consistency ratio of 5.65. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR014HQD | float |
TF_ChIP-seq_ENCSR014HQD |
TF_ChIP-seq ENCSR014HQD [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF382" and target="ZNF382"]
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[10.4, 251] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF524CCS.bed.gz | 7.42 KB | 8cf67fcb83bcd3c829f11f740d7d3329 |
| ENCFF524CCS.bed.gz.dvc | 98.0 B | 631e3b93b70d00c5e0c94a9f9d060ec3 |
| ENCFF524CCS.tabix.bed.gz | 5.19 KB | 7b1b86d4486d9a40e4a13dfd9845893f |
| ENCFF524CCS.tabix.bed.gz.dvc | 104.0 B | 5cc392eeec39ee4900031c12cf93c617 |
| ENCFF524CCS.tabix.bed.gz.tbi | 7.45 KB | 07c4591891d2cf9a8c0edf9efdabf100 |
| ENCFF524CCS.tabix.bed.gz.tbi.dvc | 108.0 B | 300c3daf06956ac4b60ec9077980cf73 |
| genomic_resource.yaml | 5.49 KB | 9d1336c849a2becf48212bf60ac6254b |
| genomic_resource_original.yaml | 5.33 KB | 00f37a2b4c94b975c10129fdd4034a42 |
| statistics/ |