TF_ChIP-seq_ENCSR013DKM
TF_ChIP-seq ENCSR013DKM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530" and target="ZNF530"]
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| Id: | TF_ChIP-seq/ENCSR013DKM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR013DKM [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530" and target="ZNF530"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN880WDB|/analyses/ENCAN880WDB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN880WDB|/analyses/ENCAN880WDB/} has in progress subobject document {381d7dc0-8fd9-45be-88db-e4aa57b4ef01|/documents/381d7dc0-8fd9-45be-88db-e4aa57b4ef01/} audit_warning: Processed alignments file {ENCFF776LJO|/files/ENCFF776LJO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 17302087 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF530-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF615AGQ|/files/ENCFF615AGQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline has 19037359 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF530-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF615AGQ|/files/ENCFF615AGQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF615AGQ|/files/ENCFF615AGQ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR013DKM | float |
TF_ChIP-seq_ENCSR013DKM |
TF_ChIP-seq ENCSR013DKM [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF530" and target="ZNF530"]
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[6.39, 463] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF468WZL.bed.gz | 35.5 KB | a5c79ff826a105ae28e0acca029cb8fa |
| ENCFF468WZL.bed.gz.dvc | 99.0 B | 9ad2bd7c461eecec2aa655032d08c699 |
| ENCFF468WZL.tabix.bed.gz | 25.11 KB | a09d7f73f0ea32b67c3303c420e47504 |
| ENCFF468WZL.tabix.bed.gz.dvc | 105.0 B | 4dfba230542a8d0ee1b7afd778ff9cc8 |
| ENCFF468WZL.tabix.bed.gz.tbi | 19.82 KB | 8d6939e8b83ce34fb548417190918f29 |
| ENCFF468WZL.tabix.bed.gz.tbi.dvc | 109.0 B | bc8bfe3785d60d7adcd24ecdadc74dde |
| genomic_resource.yaml | 4.15 KB | 4d604b09bdac06797cdf281fb8964feb |
| genomic_resource_original.yaml | 3.99 KB | f4ef19b1c1854ea52ce5fefdbb592249 |
| statistics/ |