TF_ChIP-seq_ENCSR011WGT
TF_ChIP-seq ENCSR011WGT [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1" and target="GABPB1"]
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| Id: | TF_ChIP-seq/ENCSR011WGT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR011WGT [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1" and target="GABPB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN334SXZ|/analyses/ENCAN334SXZ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF810GWN|/files/ENCFF810GWN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF810GWN|/files/ENCFF810GWN/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.87. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF700HZR|/files/ENCFF700HZR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF700HZR|/files/ENCFF700HZR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.35. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR011WGT | float |
TF_ChIP-seq_ENCSR011WGT |
TF_ChIP-seq ENCSR011WGT [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens GABPB1" and target="GABPB1"]
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[10.3, 1e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF009RFC.bed.gz | 408.73 KB | 03f477652819abc2afd90b296805750a |
| ENCFF009RFC.bed.gz.dvc | 100.0 B | 246e135343b13d95423cd15c38c59d20 |
| ENCFF009RFC.tabix.bed.gz | 330.28 KB | 7d260b4d68fd9c6566ac0e90fc253089 |
| ENCFF009RFC.tabix.bed.gz.dvc | 106.0 B | b32fcbda9478638cd936633c255559ee |
| ENCFF009RFC.tabix.bed.gz.tbi | 120.1 KB | 3141e962f712d81cc1631e707b921f43 |
| ENCFF009RFC.tabix.bed.gz.tbi.dvc | 110.0 B | 9b49e10ee408ec823240d767d3aad87b |
| genomic_resource.yaml | 4.24 KB | cf5164296941cd7e3c94ec56836a6348 |
| genomic_resource_original.yaml | 4.07 KB | 8ea809a8a9798019ce80d17f16c38e9e |
| statistics/ |