TF_ChIP-seq_ENCSR011PEI
TF_ChIP-seq ENCSR011PEI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF175" and target="ZNF175"]
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| Id: | TF_ChIP-seq/ENCSR011PEI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR011PEI [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF175" and target="ZNF175"] |
| Description: |
status: archived biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF175 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN406TCX|/analyses/ENCAN406TCX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF775KLX|/files/ENCFF775KLX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14488465 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF175-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF538HUN|/files/ENCFF538HUN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19769156 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF175-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF775KLX|/files/ENCFF775KLX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF775KLX|/files/ENCFF775KLX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR011PEI | float |
TF_ChIP-seq_ENCSR011PEI |
TF_ChIP-seq ENCSR011PEI [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF175" and target="ZNF175"]
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[7.64, 794] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF721LDD.bed.gz | 341.75 KB | ce3af08120a96fe3dd29ae6b4b209bae |
| ENCFF721LDD.bed.gz.dvc | 100.0 B | 59a746d50107e0c7237325fad8f37eb6 |
| ENCFF721LDD.tabix.bed.gz | 277.43 KB | fbfb79d23fb55832c792b58e15315fed |
| ENCFF721LDD.tabix.bed.gz.dvc | 106.0 B | 143b737f3bb5c69406d9c6ce13ace699 |
| ENCFF721LDD.tabix.bed.gz.tbi | 100.25 KB | f7859a81b806a84d816860d53e9a38a0 |
| ENCFF721LDD.tabix.bed.gz.tbi.dvc | 110.0 B | eb38aef5b1d3b9a65755bc514cfe0cee |
| genomic_resource.yaml | 3.91 KB | 176892376d1b273db259014e05f6e33c |
| genomic_resource_original.yaml | 3.75 KB | e8453bdb2a7bb10f5cad6ddc98c7da6b |
| statistics/ |