| Id: | TF_ChIP-seq/ENCSR006WUS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR006WUS [biosamplesummary="Homo sapiens MCF-7" and target="NEUROD1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN565MUI|/analyses/ENCAN565MUI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN565MUI|/analyses/ENCAN565MUI/} has in progress subobject document {63771c23-0165-4531-a49f-eb2395a952f5|/documents/63771c23-0165-4531-a49f-eb2395a952f5/} audit_warning: Processed alignments file {ENCFF797TJA|/files/ENCFF797TJA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 17123265 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NEUROD1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF796KBR|/files/ENCFF796KBR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.27 and a self consistency ratio of 2.73. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR006WUS | float |
TF_ChIP-seq_ENCSR006WUS |
TF_ChIP-seq ENCSR006WUS [biosample_summary="Homo sapiens MCF-7" and target="NEUROD1"]
|
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[10.5, 2.6e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF796KBR.bed.gz | 99.42 KB | 8c11af779ed57e3e3f06eddea3d3f3cc |
| ENCFF796KBR.bed.gz.dvc | 100.0 B | f294aab7bf5b305f201bd6b4106c5b65 |
| ENCFF796KBR.tabix.bed.gz | 71.07 KB | d8c2c3be4a5ac382498c5cd5f53c5768 |
| ENCFF796KBR.tabix.bed.gz.dvc | 105.0 B | 5855733253d6402cb945432637572bc3 |
| ENCFF796KBR.tabix.bed.gz.tbi | 50.35 KB | eac3af4cb4b09a7bc2f2f14d2c142470 |
| ENCFF796KBR.tabix.bed.gz.tbi.dvc | 109.0 B | cad878afb19966abea196afbac28936e |
| genomic_resource.yaml | 3.15 KB | b24eafe5eb2aef02f3205dbf8954b4c7 |
| genomic_resource_original.yaml | 3.06 KB | fd30f13750a11ff0c84193d728ba719e |
| statistics/ |