| Id: | TF_ChIP-seq/ENCSR006GAQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR006GAQ [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF10" and target="KLF10"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF10 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN048HZK|/analyses/ENCAN048HZK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF982JFM|/files/ENCFF982JFM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF982JFM|/files/ENCFF982JFM/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.00. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF558BJK|/files/ENCFF558BJK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF558BJK|/files/ENCFF558BJK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.94. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR006GAQ | float |
TF_ChIP-seq_ENCSR006GAQ |
TF_ChIP-seq ENCSR006GAQ [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens KLF10" and target="KLF10"]
|
 |
[14.3, 6.19e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF724KWC.bed.gz | 404.59 KB | 40a6b903fafda7c34cb41cfba79f5072 |
| ENCFF724KWC.bed.gz.dvc | 100.0 B | 54a7ccc873d7d3717bfef9fa37f6a222 |
| ENCFF724KWC.tabix.bed.gz | 291.12 KB | 7f53a62130d97ddf37df0997822e8254 |
| ENCFF724KWC.tabix.bed.gz.dvc | 106.0 B | e794f28f493b5ab8b0b84bdb1432a23b |
| ENCFF724KWC.tabix.bed.gz.tbi | 127.15 KB | 80bb9b31963190cc58d1fdf671fb8187 |
| ENCFF724KWC.tabix.bed.gz.tbi.dvc | 110.0 B | 2e1b2a873451e601c62697d5bd37f295 |
| genomic_resource.yaml | 4.31 KB | 559b2757451e50a0ca0b37fd2a27a0f4 |
| genomic_resource_original.yaml | 4.13 KB | fb029ba88feaa45e680c95f6ad85499c |
| statistics/ |