TF_ChIP-seq_ENCSR005WGY
TF_ChIP-seq ENCSR005WGY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407" and target="ZNF407"]
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| Id: | TF_ChIP-seq/ENCSR005WGY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR005WGY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407" and target="ZNF407"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN404WTI|/analyses/ENCAN404WTI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN404WTI|/analyses/ENCAN404WTI/} has in progress subobject document {176f4626-8049-49e0-a8c2-293438cb438a|/documents/176f4626-8049-49e0-a8c2-293438cb438a/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF665OVL|/files/ENCFF665OVL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF665OVL|/files/ENCFF665OVL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF361DAQ|/files/ENCFF361DAQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF361DAQ|/files/ENCFF361DAQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.07. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR005WGY | float |
TF_ChIP-seq_ENCSR005WGY |
TF_ChIP-seq ENCSR005WGY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF407" and target="ZNF407"]
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[17, 588] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF373JGX.bed.gz | 368.23 KB | e414f9e38834c9f2a29d166a1a6a235c |
| ENCFF373JGX.bed.gz.dvc | 100.0 B | 120e432769570368148fe18a3f30d897 |
| ENCFF373JGX.tabix.bed.gz | 290.59 KB | 1e07201d57d92bedcae093286aa51834 |
| ENCFF373JGX.tabix.bed.gz.dvc | 106.0 B | 50c904d61f780151c0fb5c05a7edc0a3 |
| ENCFF373JGX.tabix.bed.gz.tbi | 109.79 KB | 194a1e20609264c0ef4b3ddfab1eb966 |
| ENCFF373JGX.tabix.bed.gz.tbi.dvc | 110.0 B | 5cbb7b51132a13dc08c21a0e5c4e1218 |
| genomic_resource.yaml | 4.46 KB | f87f2a11f72f387e3f73a805cac7adb9 |
| genomic_resource_original.yaml | 4.3 KB | a33daabf260ddef7eabcb08a201bcc1e |
| statistics/ |