TF_ChIP-seq_ENCSR005LPI
TF_ChIP-seq ENCSR005LPI [biosample_summary="Homo sapiens omental fat pad tissue male adult (54 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR005LPI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR005LPI [biosamplesummary="Homo sapiens omental fat pad tissue male adult (54 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN035FVA|/analyses/ENCAN035FVA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF204YUH|/files/ENCFF204YUH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF204YUH|/files/ENCFF204YUH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.99. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR005LPI | float |
TF_ChIP-seq_ENCSR005LPI |
TF_ChIP-seq ENCSR005LPI [biosample_summary="Homo sapiens omental fat pad tissue male adult (54 years)" and target="CTCF"]
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[14.4, 40.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF709PEA.bed.gz | 1.57 KB | fee560dc4ec66e749c4d38567e91028c |
| ENCFF709PEA.bed.gz.dvc | 98.0 B | 84c7c6308d28b836bc4abe0a61ea0636 |
| ENCFF709PEA.tabix.bed.gz | 1.16 KB | 6b6ef10d95884b5ccdd0579f0b35837d |
| ENCFF709PEA.tabix.bed.gz.dvc | 104.0 B | 10e8b85876a5d6e4cc631a3d917a44c2 |
| ENCFF709PEA.tabix.bed.gz.tbi | 3.99 KB | 97374cbe4c560199532c43ef211e2352 |
| ENCFF709PEA.tabix.bed.gz.tbi.dvc | 108.0 B | 2128b39546aa078fd9b6ef2063a20c94 |
| genomic_resource.yaml | 2.74 KB | e29ce1596911ce3c72032b36bde5b124 |
| genomic_resource_original.yaml | 2.61 KB | 073b1997a56b3a12d0cb9cb2763a8e01 |
| statistics/ |